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Sentieon longread for pacbio hifi ready2run

Sentieon LongRead for PacBio HiFi (Ready2Run)

Executor Data Type Input

Sentieon's DNAscope LongRead pipeline for SNV, indel, and SV calling with PacBio HiFi data. The pipeline includes alignment with minimap2, and germline variant calling with Sentieon's DNAscope LongRead and LongReadSV.

Analysis Options:

  • Reference Genome Version: Choose from "hg38 GATK", "hg38", "b37 GATK", "b37", "hg19 UCSC"

Outputs:

out/
    aligned_reads / sample_aligned.cram
    aligned_index / sample_aligned.cram.crai
    sv_vcf / sample_svs.vcf.gz
    sv_vcf_tbi / sample_svs.vcf.gz.tbi